CAMI evaluation meeting

Timetable for the CAMI Evaluation Meeting in Berlin, May 27th & May 28th

Tuesday, 26.05

Arrival

 

Wednesday, 27.05

9.00h: Welcome (A. McHardy, Helmholtz Centre for Infection Research, Germany)

9.15-9.45h: "CAMI - Overview and current status of the challenge" (A. Sczyrba, Bielefeld University, Germany)

9.45-10.30h: "metaQUAST: evaluating metagenome assemblies" (A. Gurevich, Center for Algorithmic Biotechnology, Russia)

10.30-11.00h: Coffee break

11.00-11.45h: Assembly, binning and quality assessment of large complex metagenomes” (Z. Whang, DOE Joint Genome Institute, USA)

11.45-12.30h: Definition and activities within working groups

12.30-13.30h: Lunch

13.30-14.15h: "Bioboxes: Standardized bioinformatics tools using Docker containers" (P. Belmann, Bielefeld University, Germany)

14.15-15:00h:  Activities within working groups

15.00-15.30h: Coffee break

15.30h-16.30h:  Evaluating metagenomic assemblies: the devil is in the details" (Mihai Pop, University of Maryland Institute for Advanced Computer Studies, USA, via Adobe Connect)

16.30h-17.30h: Unsupervised contig binning and evaluation” (Chris Quince, University of Warwick, UK)

Thursday, 28.05

9.00-9.45h: "An Overview of Statistics to Evaluate Metagenomic Sequence Binning" (J. Dröge, Helmholtz Centre for Infection Research, Germany)

9.45- 10.30h: Assessment metrics for metagenomic profiling” (D. Koslicki, Oregon State University, USA)

10.30-11.00h: Coffee break

11.00-12:30h: Activities within the working groups

12.30-13.30h: Lunch

13.30-14.15h: CAMI - how to post it to the bench?” (T. Rattei, University of Vienna, Austria)

14.15-15.00h: Activities within the working groups

15.00-15.30h: Coffee break

15.30h-18.00h: Activities within the working groups

 

End of workshop

 

Accommodation

Location: NH Berlin Kurfürstendamm

Conference room: Kant

http://www.nh-hotels.com/hotel/nh-berlin-kurfurstendamm

Grolmanstr. 41-43
D- 10623 Berlin
Fon: +49 (0)30 / 884260
E-Mail: bob.east@nh-hotels.com
www.bestwestern.de / www.plazahotels.de/deutsch/default.htm

Special negotiated rate:

  • 26 May 105,40 Euro per night, including breakfast
  • 27 May 105,40 Euro per night, including breakfast

Organizer: Jacqueline Rapmund (Jacqueline.Rapmund@helmholtz-hzi.de)

 

This meeting is supported by


German-Canadian DFG International Research Training Group, Bielefeld University, Germany