Critical Assessment of Metagenome Interpretation
Assembly benchmarking results
CAMI III
Dataset Sample # results
Toy Human Gut: Simulated Oxford Nanopore metagenomic data cami3_toy_human_gut_long_read_pooled_assembly 1
Toy Human Gut: Simulated Illumina HiSeq metagenomic data cami3_toy_human_gut_short_read_pooled_assembly 1
CAMI II
Dataset Sample # results
Plant-associated: Simulated Oxford Nanopore metagenome data rhimgCAMI2_long_read_ont_pooled_assembly 3
Plant-associated: Simulated Pacific Bioscience metagenome data rhimgCAMI2_long_read_pacbio_pooled_assembly 1
Plant-associated: Simulated Illumina HiSeq metagenome data rhimgCAMI2_short_read_pooled_assembly 8
Marine: Simulated hybrid metagenome data marmgCAMI2_hybrid_pooled_assembly 2
Marine: Simulated Illumina HiSeq metagenome data marmgCAMI2_short_read_pooled_assembly 11
marmgCAMI2_short_read_sample_0 2
marmgCAMI2_short_read_sample_1 1
marmgCAMI2_short_read_sample_2 1
marmgCAMI2_short_read_sample_3 1
Marine: Simulated Pacific Bioscience metagenome data marmgCAMI2_long_read_pooled_assembly 1
marmgCAMI2_long_read_sample_0 1
Strain-madness: Simulated Illumina HiSeq metagenome data strmgCAMI2_short_read_pooled_assembly 5
Strain-madness: Simulated Pacific Bioscience metagenome data strmgCAMI2_long_read_pooled_assembly 1
Toy Mouse Gut: Simulated Illumina HiSeq metagenome data mousegutCAMI2_short_read_pooled_assembly 1
mousegutCAMI2_short_read_sample_0 2
mousegutCAMI2_short_read_sample_1 2
mousegutCAMI2_short_read_sample_2 2
mousegutCAMI2_short_read_sample_3 2
mousegutCAMI2_short_read_sample_4 2
mousegutCAMI2_short_read_sample_5 2
mousegutCAMI2_short_read_sample_6 2
mousegutCAMI2_short_read_sample_7 2
mousegutCAMI2_short_read_sample_8 2
mousegutCAMI2_short_read_sample_9 2
Toy Human Microbiome Project: Oral - Simulated Illumina HiSeq hmp_gastrooralCAMI2_short_read_pooled_assembly 1
CAMI I
Dataset Sample # results
High complexity: Simulated Illumina HiSeq cami1_high_pooled_assembly 11
Medium complexity: Simulated Illumina HiSeq 270 bp inserts cami1_medium_pooled_assembly 2
Low complexity: Simulated Illumina HiSeq cami1_low_short_read 13