Genome binning benchmarking results
CAMI II
| Dataset | Sample | # results |
|---|---|---|
| Plant-associated: Simulated Oxford Nanopore metagenome data | rhimgCAMI2_long_read_ont_pooled_gold_standard_assembly | 1 |
| Plant-associated: Simulated Pacific Bioscience metagenome data | rhimgCAMI2_long_read_pacbio_pooled_gold_standard_assembly | 1 |
| Plant-associated: Simulated Illumina HiSeq metagenome data | rhimgCAMI2_short_read_pooled_gold_standard_assembly | 12 |
| Averages over 21 samples | 1 | |
| Marine: Simulated Illumina HiSeq metagenome data | marmgCAMI2_short_read_sample_0_gsa | 2 |
| marmgCAMI2_short_read_pooled_gold_standard_assembly | 31 | |
| Averages over 10 samples | 2 | |
| Marine: Simulated Pacific Bioscience metagenome data | Averages over 10 samples | 1 |
| Strain-madness: Simulated Illumina HiSeq metagenome data | strmgCAMI2_short_read_sample_0_gsa | 2 |
| strmgCAMI2_short_read_pooled_gold_standard_assembly | 22 | |
| Averages over 100 samples | 1 | |
| Strain-madness: Simulated Pacific Bioscience metagenome data | Averages over 100 samples | 1 |
| Toy Mouse Gut: Simulated Illumina HiSeq metagenome data | mousegutCAMI2_short_read_pooled_gold_standard_assembly | 5 |
CAMI I
| Dataset | Sample | # results |
|---|---|---|
| High complexity: Simulated Illumina HiSeq | cami1_high_gold_standard_assembly | 7 |
| Averages over 5 samples | 1 | |
| Medium complexity: Simulated Illumina HiSeq 5000 bp inserts | cami1_medium_gold_standard_assembly | 8 |
| Averages over 2 samples | 1 | |
| Medium complexity: Simulated Illumina HiSeq 270 bp inserts | Averages over 2 samples | 1 |
| Low complexity: Simulated Illumina HiSeq | cami1_low_short_read | 2 |
| cami1_low_gold_standard_assembly | 4 | |