Critical Assessment of Metagenome Interpretation

Genome binning benchmarking results
CAMI II
Dataset Sample # results
Plant-associated: Simulated Oxford Nanopore metagenome data rhimgCAMI2_long_read_ont_pooled_gold_standard_assembly 1
Plant-associated: Simulated Pacific Bioscience metagenome data rhimgCAMI2_long_read_pacbio_pooled_gold_standard_assembly 1
Plant-associated: Simulated Illumina HiSeq metagenome data rhimgCAMI2_short_read_pooled_gold_standard_assembly 12
Averages over 21 samples 1
Marine: Simulated Illumina HiSeq metagenome data marmgCAMI2_short_read_pooled_gold_standard_assembly 28
Averages over 10 samples 2
Strain-madness: Simulated Illumina HiSeq metagenome data strmgCAMI2_short_read_pooled_gold_standard_assembly 22
Averages over 100 samples 1
Toy Mouse Gut: Simulated Illumina HiSeq metagenome data mousegutCAMI2_short_read_pooled_gold_standard_assembly 5
CAMI I
Dataset Sample # results
High complexity: Simulated Illumina HiSeq cami1_high_gold_standard_assembly 7
Averages over 5 samples 1
Medium complexity: Simulated Illumina HiSeq 5000 bp inserts cami1_medium_gold_standard_assembly 8
Averages over 2 samples 1
Medium complexity: Simulated Illumina HiSeq 270 bp inserts Averages over 2 samples 1
Low complexity: Simulated Illumina HiSeq cami1_low_short_read 1