Taxonomic binning benchmarking results

CAMI II

Dataset	Sample	Taxonomic rank							# results
Plant-associated: Simulated Oxford Nanopore metagenome data	rhimgCAMI2_long_read_ont_pooled_gold_standard_assembly	domain	phylum	class	order	family	genus	species	8
Plant-associated: Simulated Pacific Bioscience metagenome data	rhimgCAMI2_long_read_pacbio_pooled_gold_standard_assembly	domain	phylum	class	order	family	genus	species	8
Plant-associated: Simulated Illumina HiSeq metagenome data	rhimgCAMI2_short_read_pooled_gold_standard_assembly	domain	phylum	class	order	family	genus	species	8
	Averages over 21 samples	domain	phylum	class	order	family	genus	species	31

Marine: Simulated Illumina HiSeq metagenome data	marmgCAMI2_short_read_sample_0_gsa	domain	phylum	class	order	family	genus	species	7
	Averages over 10 samples	domain	phylum	class	order	family	genus	species	63

Marine: Simulated Pacific Bioscience metagenome data	Averages over 10 samples	domain	phylum	class	order	family	genus	species	14
Marine: Simulated Pacific Bioscience metagenome data
Strain-madness: Simulated Illumina HiSeq metagenome data	strmgCAMI2_short_read_sample_0_gsa	domain	phylum	class	order	family	genus	species	7
	Averages over 100 samples	domain	phylum	class	order	family	genus	species	21

Strain-madness: Simulated Pacific Bioscience metagenome data	Averages over 100 samples	domain	phylum	class	order	family	genus	species	7

Toy Mouse Gut: Simulated Illumina HiSeq metagenome data	mousegutCAMI2_short_read_pooled_gold_standard_assembly	domain	phylum	class	order	family	genus	species	8

CAMI I

Dataset	Sample	Taxonomic rank							# results
High complexity: Simulated Illumina HiSeq	cami1_high_gold_standard_assembly	domain	phylum	class	order	family	genus	species	30
	Averages over 5 samples	domain	phylum	class	order	family	genus	species	23

Medium complexity: Simulated Illumina HiSeq 5000 bp inserts	cami1_medium_gold_standard_assembly	domain	phylum	class	order	family	genus	species	44
	Averages over 2 samples	domain	phylum	class	order	family	genus	species	15

Medium complexity: Simulated Illumina HiSeq 270 bp inserts	Averages over 2 samples	domain	phylum	class	order	family	genus	species	16
Medium complexity: Simulated Illumina HiSeq 270 bp inserts
Low complexity: Simulated Illumina HiSeq	cami1_low_short_read	domain	phylum	class	order	family	genus	species	31