Critical Assessment of Metagenome Interpretation
Taxonomic binning benchmarking results
CAMI II
Dataset Sample Taxonomic rank # results
Plant-associated: Simulated Oxford Nanopore metagenome data rhimgCAMI2_long_read_ont_pooled_gold_standard_assembly domain phylum class order family genus species 8
Plant-associated: Simulated Pacific Bioscience metagenome data rhimgCAMI2_long_read_pacbio_pooled_gold_standard_assembly domain phylum class order family genus species 8
Plant-associated: Simulated Illumina HiSeq metagenome data rhimgCAMI2_short_read_pooled_gold_standard_assembly domain phylum class order family genus species 8
Averages over 21 samples domain phylum class order family genus species 24
Marine: Simulated Illumina HiSeq metagenome data marmgCAMI2_short_read_pooled_gold_standard_assembly domain phylum class order family genus species 42
Averages over 10 samples domain phylum class order family genus species 42
Strain-madness: Simulated Illumina HiSeq metagenome data strmgCAMI2_short_read_pooled_gold_standard_assembly domain phylum class order family genus species 7
Averages over 100 samples domain phylum class order family genus species 14
Toy Mouse Gut: Simulated Illumina HiSeq metagenome data mousegutCAMI2_short_read_pooled_gold_standard_assembly domain phylum class order family genus species 8
CAMI I
Dataset Sample Taxonomic rank # results
High complexity: Simulated Illumina HiSeq cami1_high_gold_standard_assembly domain phylum class order family genus species 30
Averages over 5 samples domain phylum class order family genus species 15
Medium complexity: Simulated Illumina HiSeq 5000 bp inserts cami1_medium_gold_standard_assembly domain phylum class order family genus species 44
Averages over 2 samples domain phylum class order family genus species 8
Medium complexity: Simulated Illumina HiSeq 270 bp inserts Averages over 2 samples domain phylum class order family genus species 8
Low complexity: Simulated Illumina HiSeq cami1_low_short_read domain phylum class order family genus species 15